conda 导出环境文件的方法(文件方法)
1、导出环境
conda env export > environment.yml
2、在新机器上重现环境
conda env create -f environment.yml
此时只有conda环境里的包,还需要把pip管理器中的包也加入,才能像以前一样正常使用
3、导出 requirements.txt
pip freeze > requirements.txt
4、安装requirements.txt (可忽略安装错误)
没有错误,则正常安装
pip install -r requirements.txt -i https://pypi.tuna.tsinghua.edu.cn/simple 
遇到错误中断,使用如下命令
while read requirement; do pip install $requirement -i https://pypi.tuna.tsinghua.edu.cn/simple ; done < R6requirements.txt
值得注意的一点
如果你想迁移的环境就是base环境,那么会遇到命名错误的问题,最省事的办法就是换个名字再迁移

conda create -n BBB #将环境克隆,取名为BBB

链接:https://www.jianshu.com/p/4ee474b648af

(R4) zhulab@DESKTOP-574GPKI:~$ conda env export > R4environment.yml
(R4) zhulab@DESKTOP-574GPKI:~$ pip freeze > R4requirements.txt
(R4) zhulab@DESKTOP-574GPKI:~$

(R4) zhulab@DESKTOP-574GPKI:~$ cat R4environment.yml
name: R4
channels:

  • austintwang
  • https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
  • bioconda
  • https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
  • conda-forge
  • https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
  • https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
  • https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
  • https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
  • https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
    dependencies:
  • _libgcc_mutex=0.1=conda_forge
  • _openmp_mutex=4.5=1_gnu
  • _r-mutex=1.0.1=anacondar_1
  • aioeasywebdav=2.4.0=py37h89c1867_1001
  • aiohttp=3.8.1=py37h540881e_1
  • aiosignal=1.2.0=pyhd8ed1ab_0
  • alabaster=0.7.12=py_0
  • alsa-lib=1.2.3.2=h166bdaf_0
  • amply=0.1.5=pyhd8ed1ab_0
  • anyio=3.6.1=py37h89c1867_0
  • appdirs=1.4.4=pyh9f0ad1d_0
  • argon2-cffi=21.3.0=pyhd8ed1ab_0
  • argon2-cffi-bindings=21.2.0=py37h540881e_2
  • arpack=3.7.0=hdefa2d7_2
  • async-timeout=4.0.2=pyhd8ed1ab_0
  • asynctest=0.13.0=py_0
  • attmap=0.13.2=pyhd8ed1ab_0
  • attrs=21.4.0=pyhd8ed1ab_0
  • babel=2.10.3=pyhd8ed1ab_0
  • backcall=0.2.0=pyh9f0ad1d_0
  • backports=1.0=py_2
  • backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
  • bash=5.1.16=hd863ed2_0
  • bash_kernel=0.7.2=py37h89c1867_4
  • bcrypt=3.2.2=py37h540881e_0
  • beautifulsoup4=4.10.0=pyha770c72_0
  • binutils_impl_linux-64=2.36.1=h193b22a_2
  • binutils_linux-64=2.36=hf3e587d_8
  • bioconductor-annotate=1.72.0=r41hdfd78af_0
  • bioconductor-annotationdbi=1.56.1=r41hdfd78af_0
  • bioconductor-batchelor=1.10.0=r41h619a076_1
  • bioconductor-beachmat=2.10.0=r41h619a076_1
  • bioconductor-biobase=2.54.0=r41h5c21468_1
  • bioconductor-biocgenerics=0.40.0=r41hdfd78af_0
  • bioconductor-biocio=1.4.0=r41hdfd78af_0
  • bioconductor-biocneighbors=1.12.0=r41h619a076_1
  • bioconductor-biocparallel=1.28.3=r41h619a076_0
  • bioconductor-biocsingular=1.10.0=r41h619a076_1
  • bioconductor-biostrings=2.62.0=r41h5c21468_1
  • bioconductor-bsgenome=1.62.0=r41hdfd78af_0
  • bioconductor-chromvar=1.16.0=r41h619a076_1
  • bioconductor-cner=1.30.0=r41h5c21468_1
  • bioconductor-complexheatmap=2.10.0=r41hdfd78af_0
  • bioconductor-delayedarray=0.20.0=r41h5c21468_1
  • bioconductor-delayedmatrixstats=1.16.0=r41hdfd78af_0
  • bioconductor-dirichletmultinomial=1.36.0=r41h93ef201_2
  • bioconductor-genomeinfodb=1.30.0=r41hdfd78af_0
  • bioconductor-genomeinfodbdata=1.2.7=r41hdfd78af_1
  • bioconductor-genomicalignments=1.30.0=r41h5c21468_1
  • bioconductor-genomicranges=1.46.1=r41h5c21468_0
  • bioconductor-go.db=3.14.0=r41hdfd78af_0
  • bioconductor-hdf5array=1.22.1=r41h5c21468_0
  • bioconductor-impute=1.68.0=r41h77f299f_1
  • bioconductor-iranges=2.28.0=r41h5c21468_1
  • bioconductor-keggrest=1.34.0=r41hdfd78af_0
  • bioconductor-limma=3.50.1=r41h5c21468_0
  • bioconductor-loomexperiment=1.12.0=r41hdfd78af_0
  • bioconductor-matrixgenerics=1.6.0=r41hdfd78af_0
  • bioconductor-motifmatchr=1.16.0=r41h619a076_1
  • bioconductor-preprocesscore=1.56.0=r41h5c21468_2
  • bioconductor-residualmatrix=1.4.0=r41hdfd78af_0
  • bioconductor-rhdf5=2.38.0=r41h8b353c4_2
  • bioconductor-rhdf5filters=1.6.0=r41h619a076_1
  • bioconductor-rhdf5lib=1.16.0=r41h5c21468_1
  • bioconductor-rhtslib=1.26.0=r41h5c21468_1
  • bioconductor-rsamtools=2.10.0=r41h619a076_1
  • bioconductor-rtracklayer=1.54.0=r41hdc01c10_2
  • bioconductor-s4vectors=0.32.3=r41h5c21468_0
  • bioconductor-scaledmatrix=1.2.0=r41hdfd78af_0
  • bioconductor-scuttle=1.4.0=r41h619a076_1
  • bioconductor-seqlogo=1.60.0=r41hdfd78af_0
  • bioconductor-singlecellexperiment=1.16.0=r41hdfd78af_0
  • bioconductor-sparsematrixstats=1.6.0=r41h619a076_1
  • bioconductor-summarizedexperiment=1.24.0=r41hdfd78af_0
  • bioconductor-tfbstools=1.32.0=r41h5c21468_1
  • bioconductor-xvector=0.34.0=r41h5c21468_1
  • bioconductor-zlibbioc=1.40.0=r41h5c21468_1
  • blas=1.1=openblas
  • bleach=4.1.0=pyhd8ed1ab_0
  • blosc=1.21.0=h9c3ff4c_0
  • boost-cpp=1.74.0=h6cacc03_7
  • boto3=1.22.9=pyhd8ed1ab_0
  • botocore=1.25.9=pyhd8ed1ab_0
  • bowtie=1.0.0=1
  • bowtie2=2.2.5=py37h22450f8_8
  • brotli=1.0.9=h166bdaf_7
  • brotli-bin=1.0.9=h166bdaf_7
  • brotlipy=0.7.0=py37h540881e_1004
  • bwidget=1.9.14=ha770c72_1
  • bzip2=1.0.8=h7f98852_4
  • c-ares=1.18.1=h7f98852_0
  • ca-certificates=2022.9.24=ha878542_0
  • cached-property=1.5.2=hd8ed1ab_1
  • cached_property=1.5.2=pyha770c72_1
  • cachetools=5.0.0=pyhd8ed1ab_0
  • cairo=1.16.0=ha12eb4b_1010
  • certifi=2022.9.24=pyhd8ed1ab_0
  • cffi=1.15.0=py37hd667e15_1
  • cfitsio=4.0.0=h9a35b8e_0
  • charset-normalizer=2.0.12=pyhd8ed1ab_0
  • coincbc=2.10.5=hcee13e7_1
  • colorama=0.4.5=pyhd8ed1ab_0
  • configargparse=1.5.3=pyhd8ed1ab_0
  • connection_pool=0.0.3=pyhd3deb0d_0
  • cryptography=36.0.2=py37h38fbfac_1
  • curl=7.83.0=h7bff187_0
  • cycler=0.11.0=pyhd8ed1ab_0
  • datrie=0.8.2=py37h5e8e339_3
  • dbus=1.13.6=h5008d03_3
  • decorator=5.1.1=pyhd8ed1ab_0
  • defusedxml=0.7.1=pyhd8ed1ab_0
  • docutils=0.18.1=py37h89c1867_1
  • dropbox=11.30.0=pyhd8ed1ab_0
  • dunamai=1.12.0=pyhd8ed1ab_0
  • entrypoints=0.4=pyhd8ed1ab_0
  • expat=2.4.7=h27087fc_0
  • fastq-screen=0.15.2=pl5321hdfd78af_0
  • fastqc=0.11.9=hdfd78af_1
  • filechunkio=1.8=py_2
  • filelock=3.6.0=pyhd8ed1ab_0
  • flit-core=3.7.1=pyhd8ed1ab_0
  • font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  • font-ttf-inconsolata=3.000=h77eed37_0
  • font-ttf-source-code-pro=2.038=h77eed37_0
  • font-ttf-ubuntu=0.83=hab24e00_0
  • fontconfig=2.13.96=h8e229c2_2
  • fonts-conda-ecosystem=1=0
  • fonts-conda-forge=1=0
  • fonttools=4.34.0=py37h540881e_0
  • freetype=2.10.4=h0708190_1
  • freexl=1.0.6=h7f98852_0
  • fribidi=1.0.10=h36c2ea0_0
  • frozenlist=1.3.0=py37h540881e_1
  • ftputil=5.0.3=pyhd8ed1ab_0
  • gcc_impl_linux-64=9.4.0=h03d3576_14
  • gcc_linux-64=9.4.0=h391b98a_8
  • gdbm=1.18=h0a1914f_2
  • geos=3.10.2=h9c3ff4c_0
  • geotiff=1.7.0=h6593c0a_6
  • get_version=3.5.4=pyhd8ed1ab_0
  • gettext=0.19.8.1=h73d1719_1008
  • gfortran_impl_linux-64=9.4.0=h0003116_14
  • gfortran_linux-64=9.4.0=hf0ab688_8
  • giflib=5.2.1=h36c2ea0_2
  • git=2.34.1=pl5262hc120c5b_0
  • gitdb=4.0.9=pyhd8ed1ab_0
  • gitpython=3.1.27=pyhd8ed1ab_0
  • glpk=4.65=h9202a9a_1004
  • gmp=6.2.1=h58526e2_0
  • google-api-core=2.7.1=pyhd8ed1ab_0
  • google-api-python-client=2.47.0=pyhd8ed1ab_0
  • google-auth=2.6.6=pyh6c4a22f_0
  • google-auth-httplib2=0.1.0=pyhd8ed1ab_0
  • google-cloud-core=2.2.2=pyh6c4a22f_0
  • google-cloud-storage=2.1.0=pyh6c4a22f_0
  • google-crc32c=1.1.2=py37h5d4fa31_3
  • google-resumable-media=2.1.0=pyh6c4a22f_0
  • googleapis-common-protos=1.56.0=py37h89c1867_0
  • graphite2=1.3.13=h58526e2_1001
  • grpcio=1.45.0=py37he500948_0
  • gsl=2.7=he838d99_0
  • gst-plugins-base=1.20.2=hcf0ee16_0
  • gstreamer=1.20.2=hd4edc92_0
  • gxx_impl_linux-64=9.4.0=h03d3576_14
  • gxx_linux-64=9.4.0=h0316aca_8
  • harfbuzz=4.1.0=h40b6f09_0
  • hdf4=4.2.15=h10796ff_3
  • hdf5=1.12.1=nompi_h2386368_104
  • htslib=1.14=h9753748_2
  • httplib2=0.20.4=pyhd8ed1ab_0
  • icu=69.1=h9c3ff4c_0
  • idna=3.3=pyhd8ed1ab_0
  • imagesize=1.4.1=pyhd8ed1ab_0
  • importlib_metadata=4.11.3=hd8ed1ab_1
  • importlib_resources=5.4.0=pyhd8ed1ab_0
  • iniconfig=1.1.1=pyh9f0ad1d_0
  • ipykernel=5.5.5=py37h085eea5_0
  • ipython=7.33.0=py37h89c1867_0
  • ipython_genutils=0.2.0=py_1
  • ipywidgets=7.7.0=pyhd8ed1ab_0
  • jbig=2.1=h7f98852_2003
  • jedi=0.18.1=py37h89c1867_1
  • jinja2=3.0.3=pyhd8ed1ab_0
  • jmespath=1.0.0=pyhd8ed1ab_0
  • joblib=1.1.0=pyhd8ed1ab_0
  • jpeg=9e=h7f98852_0
  • json-c=0.15=h98cffda_0
  • json5=0.9.5=pyh9f0ad1d_0
  • jsonschema=4.4.0=pyhd8ed1ab_0
  • jupyter=1.0.0=py37h89c1867_7
  • jupyter_client=7.1.2=pyhd8ed1ab_0
  • jupyter_console=6.4.3=pyhd8ed1ab_0
  • jupyter_core=4.9.2=py37h89c1867_0
  • jupyter_server=1.17.1=pyhd8ed1ab_0
  • jupyterlab=3.5.0=pyhd8ed1ab_0
  • jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
  • jupyterlab_server=2.14.0=pyhd8ed1ab_0
  • jupyterlab_widgets=1.1.0=pyhd8ed1ab_0
  • kealib=1.4.14=h87e4c3c_3
  • kernel-headers_linux-64=2.6.32=he073ed8_15
  • keyutils=1.6.1=h166bdaf_0
  • kiwisolver=1.4.2=py37h295c915_0
  • krb5=1.19.3=h3790be6_0
  • lcms2=2.12=hddcbb42_0
  • ld_impl_linux-64=2.36.1=hea4e1c9_2
  • legacy-api-wrap=1.2=py_0
  • lerc=3.0=h9c3ff4c_0
  • libbigwig=0.4.6=h41a57b0_2
  • libblas=3.9.0=15_linux64_openblas
  • libbrotlicommon=1.0.9=h166bdaf_7
  • libbrotlidec=1.0.9=h166bdaf_7
  • libbrotlienc=1.0.9=h166bdaf_7
  • libcblas=3.9.0=15_linux64_openblas
  • libclang=13.0.1=default_hc23dcda_0
  • libcrc32c=1.1.2=h9c3ff4c_0
  • libcurl=7.83.0=h7bff187_0
  • libdap4=3.20.6=hd7c4107_2
  • libdeflate=1.10=h7f98852_0
  • libedit=3.1.20191231=he28a2e2_2
  • libev=4.33=h516909a_1
  • libevent=2.1.10=h9b69904_4
  • libffi=3.4.2=h7f98852_5
  • libgcc-devel_linux-64=9.4.0=hd854feb_14
  • libgcc-ng=12.1.0=h8d9b700_16
  • libgd=2.3.3=h283352f_2
  • libgdal=3.4.1=haddd6ec_5
  • libgfortran=3.0.0=1
  • libgfortran-ng=11.2.0=h69a702a_14
  • libgfortran5=11.2.0=h5c6108e_14
  • libgit2=1.4.3=h6529ace_0
  • libglib=2.70.2=h174f98d_4
  • libgomp=12.1.0=h8d9b700_16
  • libiconv=1.16=h516909a_0
  • libkml=1.3.0=h238a007_1014
  • liblapack=3.9.0=15_linux64_openblas
  • libllvm11=11.1.0=hf817b99_3
  • libllvm13=13.0.1=hf817b99_2
  • libnetcdf=4.8.1=nompi_hb3fd0d9_101
  • libnghttp2=1.47.0=h727a467_0
  • libnsl=2.0.0=h7f98852_0
  • libogg=1.3.4=h7f98852_1
  • libopenblas=0.3.20=h043d6bf_1
  • libopus=1.3.1=h7f98852_1
  • libpng=1.6.37=h21135ba_2
  • libpq=14.2=hd57d9b9_0
  • libprotobuf=3.20.0=h6239696_0
  • librttopo=1.1.0=hf69c175_9
  • libsanitizer=9.4.0=h79bfe98_14
  • libsodium=1.0.18=h36c2ea0_1
  • libspatialite=5.0.1=h0e567f8_14
  • libssh2=1.10.0=ha56f1ee_2
  • libstdcxx-devel_linux-64=9.4.0=hd854feb_14
  • libstdcxx-ng=12.1.0=ha89aaad_16
  • libtiff=4.3.0=h542a066_3
  • libuuid=2.32.1=h7f98852_1000
  • libvorbis=1.3.7=h9c3ff4c_0
  • libwebp=1.2.2=h3452ae3_0
  • libwebp-base=1.2.2=h7f98852_1
  • libxcb=1.13=h7f98852_1004
  • libxkbcommon=1.0.3=he3ba5ed_0
  • libxml2=2.9.12=h885dcf4_1
  • libzip=1.8.0=h4de3113_1
  • libzlib=1.2.11=h36c2ea0_1013
  • logmuse=0.2.6=pyh8c360ce_0
  • louvain=0.7.1=py37hcd2ae1e_1
  • lz4-c=1.9.3=h9c3ff4c_1
  • lzo=2.10=h516909a_1000
  • macs2=2.2.6=py37h516909a_0
  • make=4.3=hd18ef5c_1
  • markupsafe=2.1.1=py37h540881e_1
  • matplotlib-inline=0.1.3=pyhd8ed1ab_0
  • metis=5.1.0=h58526e2_1006
  • mistune=0.8.4=py37h5e8e339_1005
  • mpfr=4.1.0=h9202a9a_1
  • multidict=6.0.2=py37h540881e_1
  • munkres=1.0.7=py_1
  • mysql-common=8.0.29=haf5c9bc_0
  • mysql-libs=8.0.29=h28c427c_0
  • nbclassic=0.3.7=pyhd8ed1ab_0
  • nbclient=0.5.13=pyhd8ed1ab_0
  • nbconvert=6.5.0=pyhd8ed1ab_0
  • nbconvert-core=6.5.0=pyhd8ed1ab_0
  • nbconvert-pandoc=6.5.0=pyhd8ed1ab_0
  • nbformat=5.2.0=pyhd8ed1ab_0
  • ncurses=6.2=h58526e2_4
  • nest-asyncio=1.5.4=pyhd8ed1ab_0
  • nomkl=1.0=h5ca1d4c_0
  • notebook-shim=0.1.0=pyhd8ed1ab_0
  • nspr=4.32=h9c3ff4c_1
  • nss=3.76=h2350873_0
  • numexpr=2.8.0=py37h85a3170_102
  • numpy=1.21.6=py37h976b520_0
  • oauth2client=4.1.3=py_0
  • olefile=0.46=pyh9f0ad1d_1
  • openblas=0.3.3=ha44fe06_1
  • openjdk=8.0.312=h7f98852_0
  • openjpeg=2.4.0=hb52868f_1
  • openssl=1.1.1s=h166bdaf_0
  • packaging=21.3=pyhd8ed1ab_0
  • pandas=1.3.4=py37he8f5f7f_1
  • pandoc=2.17.1.1=ha770c72_0
  • pandocfilters=1.5.0=pyhd8ed1ab_0
  • pango=1.50.6=hbd2fdc8_0
  • paramiko=2.10.4=pyhd8ed1ab_0
  • parso=0.8.3=pyhd8ed1ab_0
  • patsy=0.5.2=pyhd8ed1ab_0
  • pcre=8.45=h9c3ff4c_0
  • pcre2=10.37=h032f7d1_0
  • peppy=0.31.2=pyhd8ed1ab_2
  • perl=5.32.1=2_h7f98852_perl5
  • perl-gd=2.76=pl5321h5b5514e_1
  • perl-gdgraph=1.54=pl5321hdfd78af_1
  • perl-gdtextutil=0.86=pl5321hec16e2b_7
  • pexpect=4.8.0=pyh9f0ad1d_2
  • pickleshare=0.7.5=py_1003
  • pillow=8.4.0=py37h0f21c89_0
  • pip=22.0.4=pyhd8ed1ab_0
  • pixman=0.40.0=h36c2ea0_0
  • plac=1.3.5=pyhd8ed1ab_0
  • pluggy=1.0.0=py37h89c1867_3
  • ply=3.11=py_1
  • poppler=22.01.0=h1434ded_1
  • poppler-data=0.4.11=hd8ed1ab_0
  • postgresql=14.2=h2510834_0
  • prettytable=3.3.0=pyhd8ed1ab_0
  • proj=8.2.1=h277dcde_0
  • prometheus_client=0.13.1=pyhd8ed1ab_0
  • prompt-toolkit=3.0.27=pyha770c72_0
  • prompt_toolkit=3.0.27=hd8ed1ab_0
  • protobuf=3.20.0=py37hd23a5d3_4
  • psutil=5.9.0=py37h540881e_1
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  • rsa=4.8=pyhd8ed1ab_0
  • s3transfer=0.5.2=pyhd8ed1ab_0
  • scikit-learn=1.0.2=py37hf9e9bfc_0
  • seaborn=0.11.2=hd8ed1ab_0
  • seaborn-base=0.11.2=pyhd8ed1ab_0
  • sed=4.8=he412f7d_0
  • send2trash=1.8.0=pyhd8ed1ab_0
  • setuptools=59.8.0=py37h89c1867_1
  • setuptools-scm=7.0.4=pyhd8ed1ab_0
  • setuptools_scm=7.0.4=hd8ed1ab_0
  • sinfo=0.3.1=py_0
  • six=1.16.0=pyh6c4a22f_0
  • slacker=0.14.0=py_0
  • smart_open=6.0.0=pyhd8ed1ab_0
  • smmap=3.0.5=pyh44b312d_0
  • snakemake=7.6.1=hdfd78af_0
  • snakemake-minimal=7.6.1=pyhdfd78af_0
  • sniffio=1.2.0=py37h89c1867_3
  • snowballstemmer=2.2.0=pyhd8ed1ab_0
  • soupsieve=2.3.1=pyhd8ed1ab_0
  • sphinx=5.0.2=pyh6c4a22f_0
  • sphinxcontrib-applehelp=1.0.2=py_0
  • sphinxcontrib-devhelp=1.0.2=py_0
  • sphinxcontrib-htmlhelp=2.0.0=pyhd8ed1ab_0
  • sphinxcontrib-jsmath=1.0.1=py_0
  • sphinxcontrib-qthelp=1.0.3=py_0
  • sphinxcontrib-serializinghtml=1.1.5=pyhd8ed1ab_2
  • sqlite=3.38.0=hc218d9a_0
  • stdlib-list=0.7.0=py_2
  • stone=3.3.1=pyhd8ed1ab_0
  • stopit=1.1.2=py_0
  • suitesparse=5.10.1=h9e50725_1
  • sysroot_linux-64=2.12=he073ed8_15
  • tabix=1.11=hdfd78af_0
  • tabulate=0.8.9=pyhd8ed1ab_0
  • terminado=0.13.3=py37h89c1867_1
  • testpath=0.6.0=pyhd8ed1ab_0
  • texttable=1.6.4=pyhd8ed1ab_0
  • threadpoolctl=3.1.0=pyh8a188c0_0
  • tiledb=2.7.2=h1e4a385_0
  • tinycss2=1.1.1=pyhd8ed1ab_0
  • tk=8.6.12=h27826a3_0
  • tktable=2.10=hb7b940f_3
  • tomli=2.0.1=pyhd8ed1ab_0
  • toposort=1.7=pyhd8ed1ab_0
  • tornado=6.1=py37h540881e_3
  • traitlets=5.1.1=pyhd8ed1ab_0
  • typing-extensions=4.2.0=hd8ed1ab_1
  • typing_extensions=4.2.0=pyha770c72_1
  • tzcode=2022a=h166bdaf_0
  • tzdata=2022a=h191b570_0
  • ubiquerg=0.6.1=pyh9f0ad1d_0
  • udunits2=2.2.28=hc3e0081_0
  • unicodedata2=14.0.0=py37h540881e_1
  • uritemplate=4.1.1=pyhd8ed1ab_0
  • urllib3=1.26.9=pyhd8ed1ab_0
  • veracitools=0.1.3=py_0
  • wcwidth=0.2.5=pyh9f0ad1d_2
  • webencodings=0.5.1=py_1
  • websocket-client=1.3.2=pyhd8ed1ab_0
  • wheel=0.37.1=pyhd8ed1ab_0
  • widgetsnbextension=3.6.0=py37h89c1867_0
  • wiggletools=1.2.11=hac93ebf_2
  • wrapt=1.14.1=py37h540881e_0
  • xerces-c=3.2.3=h8ce2273_4
  • xorg-kbproto=1.0.7=h7f98852_1002
  • xorg-libice=1.0.10=h7f98852_0
  • xorg-libsm=1.2.3=hd9c2040_1000
  • xorg-libx11=1.7.2=h7f98852_0
  • xorg-libxau=1.0.9=h7f98852_0
  • xorg-libxdmcp=1.1.3=h7f98852_0
  • xorg-libxext=1.3.4=h7f98852_1
  • xorg-libxrender=0.9.10=h7f98852_1003
  • xorg-libxt=1.2.1=h7f98852_2
  • xorg-renderproto=0.11.1=h7f98852_1002
  • xorg-xextproto=7.3.0=h7f98852_1002
  • xorg-xproto=7.0.31=h7f98852_1007
  • xz=5.2.5=h516909a_1
  • yaml=0.2.5=h7f98852_2
  • yarl=1.7.2=py37h540881e_2
  • yte=1.2.3=py37h89c1867_0
  • zeromq=4.3.4=h9c3ff4c_1
  • zipp=3.7.0=pyhd8ed1ab_1
  • zlib=1.2.11=h36c2ea0_1013
  • zstd=1.5.2=ha95c52a_0
  • pip:
    • anndata==0.7.8
    • click==8.1.3
    • diopy==0.5.5
    • h5py==3.6.0
    • igraph==0.9.11
    • importlib-metadata==4.8.2
    • leidenalg==0.8.10
    • liftover==1.1.13
    • llvmlite==0.36.0
    • loompy==3.0.6
    • matplotlib==3.5.0
    • mudata==0.1.1
    • muon==0.1.2
    • natsort==8.0.0
    • networkx==2.6.3
    • notebook==6.4.12
    • numba==0.53.1
    • numpy-groupies==0.9.17
    • plotly==5.8.0
    • scanpy==1.9.1
    • scipy==1.7.3
    • session-info==1.0.0
    • sklearn==0.0
    • statsmodels==0.13.1
    • tables==3.6.1
    • tbb==2021.6.0
    • tenacity==8.0.1
    • tqdm==4.62.3
    • umap-learn==0.5.2
    • watermark==2.3.1
    • xgboost==1.6.1
    • xlrd==1.2.0
      prefix: /home/zhulab/miniconda3/envs/R4
      (R4) zhulab@DESKTOP-574GPKI:~$

(R4) zhulab@DESKTOP-574GPKI:~$ cat R4requirements.txt
aioeasywebdav2.4.0
aiohttp @ file:///home/conda/feedstock_root/build_artifacts/aiohttp_1649013150570/work
aiosignal @ file:///home/conda/feedstock_root/build_artifacts/aiosignal_1636093929600/work
alabaster
0.7.12
amply @ file:///home/conda/feedstock_root/build_artifacts/amply_1650975715775/work
anndata0.7.8
anyio @ file:///home/conda/feedstock_root/build_artifacts/anyio_1652463872367/work/dist
appdirs @ file:///home/conda/feedstock_root/build_artifacts/appdirs_1603108395799/work
argon2-cffi @ file:///home/conda/feedstock_root/build_artifacts/argon2-cffi_1640817743617/work
argon2-cffi-bindings @ file:///home/conda/feedstock_root/build_artifacts/argon2-cffi-bindings_1649500320262/work
async-timeout @ file:///home/conda/feedstock_root/build_artifacts/async-timeout_1640026696943/work
asynctest
0.13.0
attmap @ file:///home/conda/feedstock_root/build_artifacts/attmap_1636190286002/work
attrs @ file:///home/conda/feedstock_root/build_artifacts/attrs_1640799537051/work
Babel @ file:///home/conda/feedstock_root/build_artifacts/babel_1655419414885/work
backcall @ file:///home/conda/feedstock_root/build_artifacts/backcall_1592338393461/work
backports.functools-lru-cache @ file:///home/conda/feedstock_root/build_artifacts/backports.functools_lru_cache_1618230623929/work
bash_kernel @ file:///home/conda/feedstock_root/build_artifacts/bash_kernel_1637068786247/work
bcrypt @ file:///home/conda/feedstock_root/build_artifacts/bcrypt_1651441523927/work
beautifulsoup4 @ file:///home/conda/feedstock_root/build_artifacts/beautifulsoup4_1631087867185/work
bleach @ file:///home/conda/feedstock_root/build_artifacts/bleach_1629908509068/work
boto3 @ file:///home/conda/feedstock_root/build_artifacts/boto3_1651914230476/work
botocore @ file:///home/conda/feedstock_root/build_artifacts/botocore_1651876558220/work
brotlipy @ file:///home/conda/feedstock_root/build_artifacts/brotlipy_1648854164153/work
cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work
cachetools @ file:///home/conda/feedstock_root/build_artifacts/cachetools_1640686991047/work
certifi2022.9.24
cffi @ file:///opt/conda/conda-bld/cffi_1642701102775/work
charset-normalizer @ file:///home/conda/feedstock_root/build_artifacts/charset-normalizer_1644853463426/work
click
8.1.3
colorama @ file:///home/conda/feedstock_root/build_artifacts/colorama_1655412516417/work
ConfigArgParse @ file:///home/conda/feedstock_root/build_artifacts/configargparse_1633358864834/work
connection-pool @ file:///home/conda/feedstock_root/build_artifacts/connection_pool_1608581887050/work
cryptography @ file:///home/conda/feedstock_root/build_artifacts/cryptography_1649035231366/work
cycler @ file:///home/conda/feedstock_root/build_artifacts/cycler_1635519461629/work
datrie @ file:///home/conda/feedstock_root/build_artifacts/datrie_1636388972741/work
decorator @ file:///home/conda/feedstock_root/build_artifacts/decorator_1641555617451/work
defusedxml @ file:///home/conda/feedstock_root/build_artifacts/defusedxml_1615232257335/work
diopy0.5.5
docutils @ file:///home/conda/feedstock_root/build_artifacts/docutils_1648737573548/work
dropbox @ file:///home/conda/feedstock_root/build_artifacts/dropbox_1651337304391/work
dunamai @ file:///home/conda/feedstock_root/build_artifacts/dunamai_1651927329982/work
entrypoints @ file:///home/conda/feedstock_root/build_artifacts/entrypoints_1643888246732/work
filechunkio
1.8
filelock @ file:///home/conda/feedstock_root/build_artifacts/filelock_1645136850180/work
flit_core @ file:///home/conda/feedstock_root/build_artifacts/flit-core_1645629044586/work/source/flit_core
fonttools @ file:///home/conda/feedstock_root/build_artifacts/fonttools_1657120663890/work
frozenlist @ file:///home/conda/feedstock_root/build_artifacts/frozenlist_1648771692657/work
ftputil @ file:///home/conda/feedstock_root/build_artifacts/ftputil_1643226108482/work
get_version @ file:///home/conda/feedstock_root/build_artifacts/get_version_1644239612226/work/get_version-3.5.4
gitdb @ file:///home/conda/feedstock_root/build_artifacts/gitdb_1635085722655/work
GitPython @ file:///home/conda/feedstock_root/build_artifacts/gitpython_1645531658201/work
google-api-core @ file:///home/conda/feedstock_root/build_artifacts/google-api-core-split_1651860742494/work
google-api-python-client @ file:///home/conda/feedstock_root/build_artifacts/google-api-python-client_1651661108169/work
google-auth @ file:///home/conda/feedstock_root/build_artifacts/google-auth_1650592442422/work
google-auth-httplib2 @ file:///home/conda/feedstock_root/build_artifacts/google-auth-httplib2_1617387471894/work
google-cloud-core @ file:///home/conda/feedstock_root/build_artifacts/google-cloud-core_1642607638110/work
google-cloud-storage @ file:///home/conda/feedstock_root/build_artifacts/google-cloud-storage_1644876711050/work
google-crc32c @ file:///home/conda/feedstock_root/build_artifacts/google-crc32c_1651517221523/work
google-resumable-media @ file:///home/conda/feedstock_root/build_artifacts/google-resumable-media_1635195007097/work
googleapis-common-protos @ file:///home/conda/feedstock_root/build_artifacts/googleapis-common-protos-feedstock_1647557369156/work
grpcio @ file:///home/conda/feedstock_root/build_artifacts/grpcio_1648220659955/work
h5py3.6.0
httplib2 @ file:///home/conda/feedstock_root/build_artifacts/httplib2_1644593570376/work
idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1642433548627/work
igraph
0.9.11
imagesize @ file:///home/conda/feedstock_root/build_artifacts/imagesize_1656939531508/work
importlib-metadata4.8.2
importlib-resources @ file:///home/conda/feedstock_root/build_artifacts/importlib_resources_1635615662634/work
iniconfig @ file:///home/conda/feedstock_root/build_artifacts/iniconfig_1603384189793/work
ipykernel @ file:///home/conda/feedstock_root/build_artifacts/ipykernel_1620912939357/work/dist/ipykernel-5.5.5-py3-none-any.whl
ipython @ file:///home/conda/feedstock_root/build_artifacts/ipython_1651240553635/work
ipython-genutils
0.2.0
ipywidgets @ file:///home/conda/feedstock_root/build_artifacts/ipywidgets_1647456365981/work
jedi @ file:///home/conda/feedstock_root/build_artifacts/jedi_1649067102072/work
Jinja2 @ file:///home/conda/feedstock_root/build_artifacts/jinja2_1636510082894/work
jmespath @ file:///home/conda/feedstock_root/build_artifacts/jmespath_1647416812516/work
joblib @ file:///home/conda/feedstock_root/build_artifacts/joblib_1633637554808/work
json5 @ file:///home/conda/feedstock_root/build_artifacts/json5_1600692310011/work
jsonschema @ file:///home/conda/feedstock_root/build_artifacts/jsonschema-meta_1642000296051/work
jupyter @ file:///home/conda/feedstock_root/build_artifacts/jupyter_1637233125178/work
jupyter-client @ file:///home/conda/feedstock_root/build_artifacts/jupyter_client_1642858610849/work
jupyter-console @ file:///home/conda/feedstock_root/build_artifacts/jupyter_console_1646669715337/work
jupyter-core @ file:///home/conda/feedstock_root/build_artifacts/jupyter_core_1645024288521/work
jupyter-server @ file:///home/conda/feedstock_root/build_artifacts/jupyter_server_1654636144140/work
jupyterlab @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_1666613090338/work
jupyterlab-pygments @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_pygments_1601375948261/work
jupyterlab-server @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_server_1652878309867/work
jupyterlab-widgets @ file:///home/conda/feedstock_root/build_artifacts/jupyterlab_widgets_1647446862951/work
kiwisolver @ file:///opt/conda/conda-bld/kiwisolver_1653292039266/work
legacy-api-wrap0.0.0
leidenalg
0.8.10
liftover1.1.13
llvmlite
0.36.0
logmuse @ file:///home/conda/feedstock_root/build_artifacts/logmuse_1594742469765/work
loompy3.0.6
louvain
0.7.1
MACS22.2.6
MarkupSafe @ file:///home/conda/feedstock_root/build_artifacts/markupsafe_1648737551960/work
matplotlib
3.5.0
matplotlib-inline @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-inline_1631080358261/work
mistune @ file:///home/conda/feedstock_root/build_artifacts/mistune_1635844677043/work
mudata0.1.1
multidict @ file:///home/conda/feedstock_root/build_artifacts/multidict_1648882415996/work
muon
0.1.2
natsort8.0.0
nbclassic @ file:///home/conda/feedstock_root/build_artifacts/nbclassic_1647450696711/work
nbclient @ file:///home/conda/feedstock_root/build_artifacts/nbclient_1646999386773/work
nbconvert @ file:///home/conda/feedstock_root/build_artifacts/nbconvert-meta_1649676641343/work
nbformat @ file:///home/conda/feedstock_root/build_artifacts/nbformat_1646951096007/work
nest-asyncio @ file:///home/conda/feedstock_root/build_artifacts/nest-asyncio_1638419302549/work
networkx
2.6.3
notebook6.4.12
notebook-shim @ file:///home/conda/feedstock_root/build_artifacts/notebook-shim_1646330736330/work
numba
0.53.1
numexpr @ file:///home/conda/feedstock_root/build_artifacts/numexpr_1649636747170/work
numpy1.21.6
numpy-groupies
0.9.17
oauth2client4.1.3
olefile @ file:///home/conda/feedstock_root/build_artifacts/olefile_1602866521163/work
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1637239678211/work
pandas
1.3.4
pandocfilters @ file:///home/conda/feedstock_root/build_artifacts/pandocfilters_1631603243851/work
paramiko @ file:///home/conda/feedstock_root/build_artifacts/paramiko_1651022640674/work
parso @ file:///home/conda/feedstock_root/build_artifacts/parso_1638334955874/work
patsy @ file:///home/conda/feedstock_root/build_artifacts/patsy_1632667180946/work
peppy @ file:///home/conda/feedstock_root/build_artifacts/peppy_1637674993563/work
pexpect @ file:///home/conda/feedstock_root/build_artifacts/pexpect_1602535608087/work
pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1602536217715/work
Pillow @ file:///home/conda/feedstock_root/build_artifacts/pillow_1636558793805/work
plac @ file:///home/conda/feedstock_root/build_artifacts/plac_1648653562884/work
plotly5.8.0
pluggy @ file:///home/conda/feedstock_root/build_artifacts/pluggy_1648772594554/work
ply
3.11
prettytable @ file:///home/conda/feedstock_root/build_artifacts/prettytable_1651787307815/work
prometheus-client @ file:///home/conda/feedstock_root/build_artifacts/prometheus_client_1643395600215/work
prompt-toolkit @ file:///home/conda/feedstock_root/build_artifacts/prompt-toolkit_1644497866770/work
protobuf3.20.0rc2
psutil @ file:///home/conda/feedstock_root/build_artifacts/psutil_1648872981136/work
ptyprocess @ file:///home/conda/feedstock_root/build_artifacts/ptyprocess_1609419310487/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl
PuLP @ file:///home/conda/feedstock_root/build_artifacts/pulp_1649461394062/work
py @ file:///home/conda/feedstock_root/build_artifacts/py_1636301881863/work
pyasn1
0.4.8
pyasn1-modules0.2.7
pycparser @ file:///home/conda/feedstock_root/build_artifacts/pycparser_1636257122734/work
Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1641580240686/work
PyNaCl @ file:///home/conda/feedstock_root/build_artifacts/pynacl_1649519971599/work
pynndescent @ file:///home/conda/feedstock_root/build_artifacts/pynndescent_1652648933546/work
pyOpenSSL @ file:///home/conda/feedstock_root/build_artifacts/pyopenssl_1643496850550/work
pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1642753572664/work
PyQt5
5.12.3
PyQt5_sip4.19.18
PyQtChart
5.12
PyQtWebEngine5.12.1
pyrsistent @ file:///home/conda/feedstock_root/build_artifacts/pyrsistent_1649013358450/work
pysftp
0.2.9
PySocks @ file:///home/conda/feedstock_root/build_artifacts/pysocks_1648857264451/work
pytest7.1.2
python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1626286286081/work
python-irodsclient @ file:///home/conda/feedstock_root/build_artifacts/python-irodsclient_1649418034820/work
pytz @ file:///home/conda/feedstock_root/build_artifacts/pytz_1647961439546/work
pyu2f @ file:///home/conda/feedstock_root/build_artifacts/pyu2f_1604248910016/work
PyYAML @ file:///home/conda/feedstock_root/build_artifacts/pyyaml_1648757092905/work
pyzmq @ file:///home/conda/feedstock_root/build_artifacts/pyzmq_1649055650631/work
qtconsole @ file:///home/conda/feedstock_root/build_artifacts/qtconsole-base_1648505151387/work
QtPy @ file:///home/conda/feedstock_root/build_artifacts/qtpy_1651524593465/work
ratelimiter @ file:///home/conda/feedstock_root/build_artifacts/ratelimiter_1602593436172/work
requests @ file:///home/conda/feedstock_root/build_artifacts/requests_1641580202195/work
retry
0.9.2
rsa @ file:///home/conda/feedstock_root/build_artifacts/rsa_1637781155505/work
s3transfer @ file:///home/conda/feedstock_root/build_artifacts/s3transfer_1645745825648/work
scanpy1.9.1
scikit-learn @ file:///home/conda/feedstock_root/build_artifacts/scikit-learn_1640464152916/work
scipy
1.7.3
seaborn @ file:///home/conda/feedstock_root/build_artifacts/seaborn-split_1629095986539/work
Send2Trash @ file:///home/conda/feedstock_root/build_artifacts/send2trash_1628511208346/work
session-info1.0.0
setuptools-scm @ file:///home/conda/feedstock_root/build_artifacts/setuptools_scm_1656687828413/work
sinfo @ file:///home/conda/feedstock_root/build_artifacts/sinfo_1597764960136/work
six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work
sklearn
0.0
slacker0.14.0
smart-open @ file:///home/conda/feedstock_root/build_artifacts/smart_open_1650793462701/work
smmap @ file:///home/conda/feedstock_root/build_artifacts/smmap_1611376390914/work
snakemake @ file:///opt/conda/conda-bld/snakemake_1651659512367/work
sniffio @ file:///home/conda/feedstock_root/build_artifacts/sniffio_1648819180181/work
snowballstemmer @ file:///home/conda/feedstock_root/build_artifacts/snowballstemmer_1637143057757/work
soupsieve @ file:///home/conda/feedstock_root/build_artifacts/soupsieve_1638550740809/work
Sphinx @ file:///home/conda/feedstock_root/build_artifacts/sphinx_1655452194084/work
sphinxcontrib-applehelp
1.0.2
sphinxcontrib-devhelp1.0.2
sphinxcontrib-htmlhelp @ file:///home/conda/feedstock_root/build_artifacts/sphinxcontrib-htmlhelp_1621704829796/work
sphinxcontrib-jsmath
1.0.1
sphinxcontrib-qthelp1.0.3
sphinxcontrib-serializinghtml @ file:///home/conda/feedstock_root/build_artifacts/sphinxcontrib-serializinghtml_1649380998999/work
statsmodels
0.13.1
stdlib-list @ file:///home/conda/feedstock_root/build_artifacts/stdlib-list_1602639452997/work
stone @ file:///home/conda/feedstock_root/build_artifacts/stone_1643284666238/work
stopit1.1.2
tables
3.6.1
tabulate @ file:///home/conda/feedstock_root/build_artifacts/tabulate_1614001031686/work
tbb2021.6.0
tenacity
8.0.1
terminado @ file:///home/conda/feedstock_root/build_artifacts/terminado_1649103772573/work
testpath @ file:///home/conda/feedstock_root/build_artifacts/testpath_1645693042223/work
texttable @ file:///home/conda/feedstock_root/build_artifacts/texttable_1626204417032/work
threadpoolctl @ file:///home/conda/feedstock_root/build_artifacts/threadpoolctl_1643647933166/work
tinycss2 @ file:///home/conda/feedstock_root/build_artifacts/tinycss2_1637612658783/work
tomli @ file:///home/conda/feedstock_root/build_artifacts/tomli_1644342247877/work
toposort @ file:///home/conda/feedstock_root/build_artifacts/toposort_1632855988193/work
tornado @ file:///home/conda/feedstock_root/build_artifacts/tornado_1648827244717/work
tqdm4.62.3
traitlets @ file:///home/conda/feedstock_root/build_artifacts/traitlets_1635260543454/work
typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/typing_extensions_1650370875435/work
ubiquerg @ file:///home/conda/feedstock_root/build_artifacts/ubiquerg_1594677918196/work
umap-learn
0.5.2
unicodedata2 @ file:///home/conda/feedstock_root/build_artifacts/unicodedata2_1649111917568/work
uritemplate @ file:///home/conda/feedstock_root/build_artifacts/uritemplate_1634152692041/work
urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1647489083693/work
veracitools0.1.3
watermark
2.3.1
wcwidth @ file:///home/conda/feedstock_root/build_artifacts/wcwidth_1600965781394/work
webencodings0.5.1
websocket-client @ file:///home/conda/feedstock_root/build_artifacts/websocket-client_1648562593984/work
widgetsnbextension @ file:///home/conda/feedstock_root/build_artifacts/widgetsnbextension_1647446886548/work
wrapt @ file:///home/conda/feedstock_root/build_artifacts/wrapt_1651495229974/work
xgboost
1.6.1
xlrd==1.2.0
yarl @ file:///home/conda/feedstock_root/build_artifacts/yarl_1648966511831/work
yte @ file:///home/conda/feedstock_root/build_artifacts/yte_1651890963093/work
zipp @ file:///home/conda/feedstock_root/build_artifacts/zipp_1643828507773/work
(R4) zhulab@DESKTOP-574GPKI:~$